CIBEX accession CBX118
Release date 2011-01-24
Experiment:
Experiment title Influence of platinum nanoparticles orally administered to rats evaluated by systemic gene expression profiling
Experimental design type reference_design, compound_treatment_design
Experimental factor influence of ingested Pt nanoparticle dispersion on animal tissues
Common reference YES
Quality control description peer_review_quality_control
Number of hybridization 100
Experimental description Platinum is recognized as a harmless metal and is widely used in many industrial products. Recent studies have proposed that platinum in the form of nanoparticles has antioxidant properties, which promotes the utilization of platinum nanoparticles as supplements and cosmetics, which are directly exposed to humans. However, the influence of platinum nanoparticles in humans has not been sufficiently evaluated thus far. Therefore, to investigate the influence of platinum nanoparticles on a living body, we comprehensively examined the expression profiles of genes obtained from 25 organs and tissues of rats after oral administration of platinum nanoparticles by gavage. Comparative analysis revealed that the expression levels of 18 genes were altered in 12 organs and tissues after the administration (approximately 0.17% of the entire genes examined). Of the tissues examined, the glandular stomach was most directly exposed to orally administered nanoparticles showed altered expression levels of genes associated with inflammation. In the subcutaneous adipose tissue, the expression level of genes whose products exhibit ATPase activity was altered. Real-time polymerase chain reaction (RT-PCR) analysis confirmed the alteration in the expression levels of these genes in the 2 different tissues. Our findings indicate that orally administered platinum nanoparticles do not have a marked effect on systemic gene expression levels, except on a small number of genes expressed in rat tissues, including peripheral tissues indirectly exposed to the orally administered nanoparticles.
Submitter:
First name Watanabe
Last name Shinya
Organization Fukushima Medical University
Address 3-8-22 Sendagaya, Shibuya-ku, Tokyo 151-0051, Japan
Reference:
Title Influence of platinum nanoparticles orally administered to rats evaluated by systemic gene expression profiling.
Author Kazuo Katao, Reiko Honma, Satoko Kato, Shinya Watanabe, Jun-ichi Imai
Journal Experimental Animals
Year 2011
Volume 60
Page 33-45
Protocol:
Name Array Design Protocol (Rat)
Description A set of synthetic polynucleotides (80-mers) representing 11,468 species of rat transcript sequences that are mostly originated from the Reference Sequence (RefSeq) project clones deposited in the National Center for Biotechnology Information (NCBI) database was purchased (MicroDiagnostic, Tokyo, Japan) and printed on a glass slide (coated glass slide for the microarray, type I; Matsunami Glass Ind., Ltd., Kishiwada, Japan) with a custom-made arrayer.
Name Treatment Protocol(supPt)
Description Supernatant of Pt nanoparticle dispersion treated in ultracentrifuge was orally administrated daily to male Wister rats at 5 ml/kg for 5 days.
Name Treatment Protocol(nanoPt)
Description Pt nanoparticle dispersion was orally administrated daily to male Wister rats at 5 ml/kg for 5 days.
Name Extraction Protocol
Description The obtained solid organs were immediately frozen in liquid nitrogen and lysed with an ISOGEN reagent (NIPPON GENE). Total RNA was prepared from the lysate according to the manufacturer?fs instructions. Poly(A)+ RNA was prepared from total RNA with a Poly(A)Purist Kit (Ambion, TX, USA), according to the manufacturers instructions.
Name Labeling Protocol(cy3)
Description Poly (A)+ RNA (1.5 microgram) was labeled with SuperScript II (Invitrogen) and Cyanine 3-dUTP (PerkinElmer, MA, USA). Labeling, hybridization, and subsequent washes of microarrays were performed with a Labeling & Hybridization Kit (MicroDiagnostic, Tokyo, Japan), in accordance with the manufacturer?fs instructions.
Name Labeling Protocol(cy5)
Description Poly (A)+ RNA (1.5 microgram) was labeled with SuperScript II (Invitrogen) and Cyanine 5-dUTP (PerkinElmer, MA, USA). Labeling, hybridization, and subsequent washes of microarrays were performed with a Labeling & Hybridization Kit (MicroDiagnostic, Tokyo, Japan), in accordance with the manufacturer?fs instructions.
Name Hybridization Protocol
Description A pair of the Cyanine 5- and Cyanine 3-labeled samples was hybridized onto a single microarray. Hybridization and subsequent washes of microarrays were performed with a Labeling & Hybridization Kit (MicroDiagnostic, Tokyo, Japan), in accordance with the manufacturer?fs instructions.
Name Scanning Protocol
Description Hybridization signals were measured with a GenePix 4000A scanner (Axon Instruments, CA, USA).
Name Image Analysis Protocol
Description Measured hybridization signals were processed into primary expression ratios ([Cyanine 5-intensity obtained from each target or control sample]/[Cyanine 3-intensity obtained from each control or target sample], which are indicated as ?emedian of ratios?f in GenePix Pro 3.0 software (Axon Instruments Inc.)).Normalization was performed for each ratio by multiplying the normalization factors calculated by the GenePix Pro 3.0 software (Axon Instruments Inc.).
Name Normalization Protocol
Description All pairs of target and control samples were labeled and hybridized to microarrays twice along with color flip of Cyanine 5 and Cyanine 3. Normalization was performed for the median of ratios (primary expression ratios) by multiplying normalization factors calculated for each feature on a microarray by the GenePix Pro 3.0 software (designated normalized ratios).
Name Transformation Protocol
Description Data processing and subsequent hierarchical clustering analysis were performed with an Excel program (Microsoft, WA, USA) and an MDI gene expression analysis software package (MicroDiagnostic). The primary expression ratios were converted into log2 values (log2 Cyanine 5- intensity/Cyanine 3- intensity)(designated log ratios).After conversion of the normalized ratios into log2 values, log ratios derived from pairs of Cyanine 3-labeled target and Cyanine 5-labeled control samples were converted into reciprocals. Eventually, log ratios derived from pairs of Cyanine 5-labeled target and Cyanine 3-labeled control samples and the reciprocal log ratios derived from pairs of Cyanine 3-labeled target and Cyanine 5-labeled control samples were subjected to calculation of mean averages for individual genes (designated mean log ratios).
Array design:
Array sesign accession CAR300
Model name Rat_11.5K
Technology type spotted_ss_oligo_features
Surface type aminosilane
Number of features 11468
Design provider Original
Reporter type synthetic oligo-nucleotides
Strand type single_stranded
Substrate type glass
Attachment covalent
Array design protocol Array Design Protocol (Rat)
File design element(11.5K_Rat_060509).txt
Array design text field:
Field Description
Block The block number of the feature
Column The column number of the feature
Row The row number of the feature
Name The name of the feature derived from the Array List
ID The unique identifier of the feature derived from the Array List
Sequence The sequence of the feature
Sample:
Name #1286_Br_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part brain
Strain or line Wister
Name #1312_Br_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part brain
Strain or line Wister
Name #1338_Br_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part brain
Strain or line Wister
Name #1364_Br_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part brain
Strain or line Wister
Name #1287_He_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part heart
Strain or line Wister
Name #1313_He_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part heart
Strain or line Wister
Name #1339_He_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part heart
Strain or line Wister
Name #1365_He_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part heart
Strain or line Wister
Name #1288_Lu_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part lung
Strain or line Wister
Name #1314_Lu_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part lung
Strain or line Wister
Name #1389_Sk_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part skin
Strain or line Wister
Name common rat reference
Organism rat
Sex mixed_sex
Name #1340_Lu_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part lung
Strain or line Wister
Name #1366_Lu_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part lung
Strain or line Wister
Name #1289_Li_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part liver
Strain or line Wister
Name #1315_Li_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part liver
Strain or line Wister
Name #1341_Li_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part liver
Strain or line Wister
Name #1367_Li_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part liver
Strain or line Wister
Name #1290_Ki_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part kidney
Strain or line Wister
Name #1316_Ki_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part kidney
Strain or line Wister
Name #1342_Ki_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part kidney
Strain or line Wister
Name #1368_Ki_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part kidney
Strain or line Wister
Name #1291_Ad_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part adrenal grand
Strain or line Wister
Name #1317_Ad_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part adrenal grand
Strain or line Wister
Name #1343_Ad_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part adrenal grand
Strain or line Wister
Name #1369_Ad_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part adrenal grand
Strain or line Wister
Name #1292_Sp_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part spleen
Strain or line Wister
Name #1318_Sp_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part spleen
Strain or line Wister
Name #1344_Sp_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part spleen
Strain or line Wister
Name #1370_Sp_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part spleen
Strain or line Wister
Name #1293_Pr_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part prostate
Strain or line Wister
Name #1319_Pr_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part prostate
Strain or line Wister
Name #1345_Pr_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part prostate
Strain or line Wister
Name #1371_Pr_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part prostate
Strain or line Wister
Name #1295_Te_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part testis
Strain or line Wister
Name #1321_Te_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part testis
Strain or line Wister
Name #1347_Te_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part testis
Strain or line Wister
Name #1373_Te_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part testis
Strain or line Wister
Name #1296_Ep_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part epididymis
Strain or line Wister
Name #1322_Ep_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part epididymis
Strain or line Wister
Name #1348_Ep_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part epididymis
Strain or line Wister
Name #1374_Ep_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part epididymis
Strain or line Wister
Name #1297_Fs_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part front stomach
Strain or line Wister
Name #1323_Fs_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part front stomach
Strain or line Wister
Name #1349_Fs_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part front stomach
Strain or line Wister
Name #1375_Fs_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part front stomach
Strain or line Wister
Name #1298_Gs_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part grand stomach
Strain or line Wister
Name #1324_Gs_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part grand stomach
Strain or line Wister
Name #1350_Gs_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part grand stomach
Strain or line Wister
Name #1376_Gs_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part grand stomach
Strain or line Wister
Name #1299_Du_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part duodenum
Strain or line Wister
Name #1325_Du_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part duodenum
Strain or line Wister
Name #1351_Du_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part duodenum
Strain or line Wister
Name #1377_Du_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part duodenum
Strain or line Wister
Name #1300_Je_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part jejunum
Strain or line Wister
Name #1326_Je_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part jejunum
Strain or line Wister
Name #1352_Je_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part jejunum
Strain or line Wister
Name #1378_Je_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part jejunum
Strain or line Wister
Name #1301_Il_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part ileum
Strain or line Wister
Name #1327_Il_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part ileum
Strain or line Wister
Name #1353_Il_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part ileum
Strain or line Wister
Name #1379_Il_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part ileum
Strain or line Wister
Name #1302_Ce_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part cecum
Strain or line Wister
Name #1328_Ce_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part cecum
Strain or line Wister
Name #1354_Ce_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part cecum
Strain or line Wister
Name #1380_Ce_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part cecum
Strain or line Wister
Name #1303_Co_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part colon
Strain or line Wister
Name #1329_Co_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part colon
Strain or line Wister
Name #1355_Co_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part colon
Strain or line Wister
Name #1381_Co_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part colon
Strain or line Wister
Name #1304_MAT_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part mesenteric adipose tissue
Strain or line Wister
Name #1330_MAT_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part mesenteric adipose tissue
Strain or line Wister
Name #1356_MAT_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part mesenteric adipose tissue
Strain or line Wister
Name #1382_MAT_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part mesenteric adipose tissue
Strain or line Wister
Name #1305_Ms_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part musculus soleus
Strain or line Wister
Name #1331_Ms_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part musculus soleus
Strain or line Wister
Name #1357_Ms_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part musculus soleus
Strain or line Wister
Name #1383_Ms_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part musculus soleus
Strain or line Wister
Name #1306_Medl_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part musculus extensor digitorum longus
Strain or line Wister
Name #1332_Medl_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part musculus extensor digitorum longus
Strain or line Wister
Name #1358_Medl_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part musculus extensor digitorum longus
Strain or line Wister
Name #1384_Medl_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part musculus extensor digitorum longus
Strain or line Wister
Name #1307_GaM_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part gastrocnemius muscle
Strain or line Wister
Name #1333_GaM_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part gastrocnemius muscle
Strain or line Wister
Name #1359_GaM_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part gastrocnemius muscle
Strain or line Wister
Name #1385_GaM_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part gastrocnemius muscle
Strain or line Wister
Name #1308_Rmt_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part rectus muscle of thigh
Strain or line Wister
Name #1334_Rmt_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part rectus muscle of thigh
Strain or line Wister
Name #1360_Rmt_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part rectus muscle of thigh
Strain or line Wister
Name #1386_Rmt_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part rectus muscle of thigh
Strain or line Wister
Name #1309_BAT_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part brown adipose tissue
Strain or line Wister
Name #1335_BAT_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part brown adipose tissue
Strain or line Wister
Name #1361_BAT_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part brown adipose tissue
Strain or line Wister
Name #1387_BAT_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part brown adipose tissue
Strain or line Wister
Name #1310_SAT_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part subcutaneous adipose tissue
Strain or line Wister
Name #1336_SAT_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part subcutaneous adipose tissue
Strain or line Wister
Name #1362_SAT_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part subcutaneous adipose tissue
Strain or line Wister
Name #1388_SAT_nanoPt_5D_4
Organism rat
Sex male
Age 7 weeks
Organism part subcutaneous adipose tissue
Strain or line Wister
Name #1311_Sk_supPt_5D_1
Organism rat
Sex male
Age 7 weeks
Organism part skin
Strain or line Wister
Name #1337_Sk_supPt_5D_2
Organism rat
Sex male
Age 7 weeks
Organism part skin
Strain or line Wister
Name #1363_Sk_nanoPt_5D_3
Organism rat
Sex male
Age 7 weeks
Organism part skin
Strain or line Wister
Labeled Extract:
Label common rat reference, Cy3
Labeling protocol Labeling Protocol(cy3)
Extraction protocol Extraction Protocol
Label compound Cy3
Label #1286_Br_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1312_Br_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1338_Br_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1364_Br_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1287_He_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1313_He_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1339_He_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1365_He_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1288_Lu_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1363_Sk_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1389_Sk_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1314_Lu_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1340_Lu_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1366_Lu_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1289_Li_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1315_Li_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1341_Li_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1367_Li_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1290_Ki_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1316_Ki_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1342_Ki_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1368_Ki_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1291_Ad_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1317_Ad_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1343_Ad_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1369_Ad_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1292_Sp_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1318_Sp_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1344_Sp_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1370_Sp_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1293_Pr_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1319_Pr_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1345_Pr_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1371_Pr_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1295_Te_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1321_Te_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1347_Te_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1373_Te_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1296_Ep_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1322_Ep_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1348_Ep_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1374_Ep_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1297_Fs_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1323_Fs_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1349_Fs_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1375_Fs_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1298_Gs_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1324_Gs_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1350_Gs_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1376_Gs_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1299_Du_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1325_Du_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1351_Du_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1377_Du_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1300_Je_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1326_Je_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1352_Je_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1378_Je_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1301_Il_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1327_Il_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1353_Il_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1379_Il_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1302_Ce_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1328_Ce_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1354_Ce_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1380_Ce_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1303_Co_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1329_Co_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1355_Co_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1381_Co_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1304_MAT_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1330_MAT_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1356_MAT_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1382_MAT_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1305_Ms_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1331_Ms_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1357_Ms_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1383_Ms_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1306_Medl_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1332_Medl_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1358_Medl_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1384_Medl_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1307_GaM_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1333_GaM_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1359_GaM_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1385_GaM_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1308_Rmt_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1334_Rmt_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1360_Rmt_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1386_Rmt_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1309_BAT_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1335_BAT_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1361_BAT_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1387_BAT_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1310_SAT_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1336_SAT_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1362_SAT_nanoPt_5D_3, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1388_SAT_nanoPt_5D_4, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1311_Sk_supPt_5D_1, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Label #1337_Sk_supPt_5D_2, Cy5
Labeling protocol Labeling Protocol(cy5)
Extraction protocol Extraction Protocol
Label compound Cy5
Hybridization:
Name 112107-4067
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4067 was 1.05663.
File 112107-4067(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5124
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5124 was 0.989593.
File 112107-5124(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4066-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4066-2 was 0.934335.
File 112107-4066-2(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5123
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5123 was 0.935463.
File 112107-5123(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4065
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4065 was 1.06978.
File 112107-4065(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5122
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5122 was 1.00898.
File 112107-5122(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4064-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4064-2 was 1.0558.
File 112107-4064-2(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5121
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5121 was 1.04745.
File 112107-5121(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4063
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4063 was 1.03056.
File 112107-4063(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5120
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5120 was 0.92969.
File 112107-5120(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4062
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4062 was 0.999565.
File 112107-4062(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5119
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5119 was 0.974092
File 112107-5119(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4119
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4119 was 1.01177.
File 112107-4119(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4094
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4094 was 0.967037.
File 112107-4094(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4118
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4118 was 0.981387.
File 112107-4118(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4093
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4093 was 1.02155.
File 112107-4093(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4117
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4117 was 1.04935.
File 112107-4117(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4092
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4092 was 1.05553.
File 112107-4092(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4116
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4116 was 0.953836.
File 112107-4116(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4091
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4091 was 1.02432.
File 112107-4091(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4061
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4061 was 112107-4061.
File 112107-4061(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5118-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5118-2 was 0.966254.
File 112107-5118-2(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4060
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4060 was 0.952008.
File 112107-4060(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5088
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5088 was 0.996186.
File 112107-5088(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4059
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4059 was 1.01985.
File 112107-4059(10)_Rat2000.gpr
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5114-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5114-2 was 1.00129.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4058-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4058-2 was 0.912068.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5113-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5113-2 was 0.9736.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4098
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4098 was 0.960002.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4090
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4090 was 1.04831.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4113
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4113 was 0.998354.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4089
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4089 was 0.97495.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4055
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4055 was 1.03891.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5087
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5087 was 1.01259.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4054
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4054 was 0.95942.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5110-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5110-2 was 0.971665.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4030
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4030 was 1.05442.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5108-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5108-2 was 0.99743.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4029
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4029 was 1.02731.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5107-2
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5107-2 was 1.00576.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4112
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4112 was 1.09092.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4088
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4088 was 1.05015.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4111
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4111 was 1.04557.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4087
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4087 was 0.977665.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4110
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4110 was 0.994768.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4086
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4086 was 0.949586.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4109
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4109 was 1.01408.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4085
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4085 was 0.953749.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4108
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4108 was 0.922447.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4084
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4084 was 0.966121.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4107
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4107 was 0.950696.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4083
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4083 was 0.934629.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4072
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4072 was 0.926862.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4082
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4082 was 0.960874.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4105
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4105 was 1.02005.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4074
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4074 was 0.983813.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4104
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4104 was 0.944224.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4080
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4080 was 0.982033.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4103
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4103 was 0.948632.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4079
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4079 was 1.04499.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4051
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4051 was 0.980782.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5106
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5106 was 1.04793.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4050
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4050 was 1.01767.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5105
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5105 was 1.04877.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4102
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4102 was 0.955751.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4078
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4078 was 1.00798.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4070
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4070 was 0.971943.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4073
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4073 was 1.00236.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4095-3
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4095-3 was 0.841446.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4076
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4076 was 0.974972.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4099
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4099 was 0.948985.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4075
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4075 was 0.97737.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4049
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4049 was 1.0075.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5104
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5104 was 1.01543.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4048
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4048 was 0.992051.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5103
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5103 was 0.996573.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4045
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4045 was 1.02658.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5102
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5102 was 1.00816.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4046
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4046 was 1.03763.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5101
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5101 was 1.00486.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4047
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4047 was 1.00206.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5100
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5100 was 0.982947.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4044
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4044 was 0.970294.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5099
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5099 was 1.03798.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4043
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4043 was 0.994108.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5098
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5098 was 1.02553.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4042
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4042 was 0.915622.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5097
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5097 was 1.0125.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4040
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4040 was 0.952773.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5096
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5096 was 1.04072.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4036
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4036 was 1.01249.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5095
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5095 was 1.03654.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4035
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4035 was 0.925559.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5093
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5093 was 0.928224.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4033
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4033 was 0.945328.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5092
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5092 was 0.954822.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4032
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4032 was 1.01843.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5091
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5091 was 1.00733.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-4031
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-4031 was 0.95051.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Name 112107-5090
Array design accession CAR300
Hybridization protocol Hybridization Protocol
Scanning protocol Scanning Protocol
Description The normalization factor of 112107-5090 was 0.967568.
File
Hybridization data text field:
Field Description
"Block" The block number of the feature.
"Column" The column number of the feature.
"Row" The row number of the feature.
"Name" The name of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"ID" The unique identifier of the feature derived from the Array List (up to 40 characters long, contained in quotation marks).
"X" The X-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Y" The Y-coordinate in ??m of the center of the feature-indicator associated with the feature, where (0,0) is the top left of the image.
"Dia." The diameter in ??m of the feature-indicator.
"F635 Median" Median feature pixel intensity at wavelength #1 (635 nm).
"F635 Mean" Mean feature pixel intensity at wavelength #1 (635 nm).
"F635 SD" The standard deviation of the feature pixel intensity at wavelength #1 (635 nm).
"B635 Median" The median feature background intensity at wavelength #1 (635 nm).
"B635 Mean" The mean feature background intensity at wavelength #1 (635 nm).
"B635 SD" The standard deviation of the feature background intensity at wavelength #1 (635 nm).
"% > B635+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #1 (635 nm).
"% > B635+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #1 (635 nm).
"F635 % Sat." The percentage of feature pixels at wavelength #1 that are saturated.
"F532 Median" Median feature pixel intensity at wavelength #2 (532 nm).
"F532 Mean" Mean feature pixel intensity at wavelength #2 (532 nm).
"F532 SD" The standard deviation of the feature intensity at wavelength #2 (532 nm).
"B532 Median" The median feature background intensity at wavelength #2 (532 nm).
"B532 Mean" The mean feature background intensity at wavelength #2 (532 nm).
"B532 SD" The standard deviation of the feature background intensity at wavelength #2 (532 nm).
"% > B532+1SD" The percentage of feature pixels with intensities more than one standard deviation above the background pixel intensity, at wavelength #2 (532 nm).
"% > B532+2SD" The percentage of feature pixels with intensities more than two standard deviations above the background pixel intensity, at wavelength #2 (532 nm).
"F532 % Sat." The percentage of feature pixels at wavelength #2 that are saturated.
"Ratio of Medians" The ratio of the median intensities of each feature for each wavelength, with the median background subtracted.
"Ratio of Means" The ratio of the arithmetic mean intensities of each feature for each wavelength, with the median background subtracted.
"Median of Ratios" The median of pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Mean of Ratios" The geometric mean of the pixel-by-pixel ratios of pixel intensities, with the median background subtracted.
"Ratios SD" The geometric standard deviation of the pixel intensity ratios.
"Rgn Ratio" The regression ratio of every pixel in a 2-feature-diameter circle around the center of the feature.
"Rgn R?" The coefficient of determination for the current regression value.
"F Pixels" The total number of feature pixels.
"B Pixels" The total number of background pixels.
"Sum of Medians" The sum of the median intensities for each wavelength, with the median background subtracted.
"Sum of Means" The sum of the arithmetic mean intensities for each wavelength, with the median background subtracted.
"Log Ratio" Log (base 2) transform of the ratio of the medians.
"F635 Median - B635" The median feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Median - B532" The median feature pixel intensity at wavelength #2 with the median background subtracted.
"F635 Mean - B635" The mean feature pixel intensity at wavelength #1 with the median background subtracted.
"F532 Mean - B532" The mean feature pixel intensity at wavelength #2 with the median background subtracted.
Summary:
Name Supplementary S1
Normalization protocol Normalization Protocol
Transformation protocol Transformation Protocol
File Supplementry S1.txt